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For the /timeout attribute, the information in the "How to Control Trial Duration and Inter-Trial Intervals" topic applies. /timeout *does* include /pretrialpause.
Note that /timeout differs from *responsemode* timeout (cf. the graphic in the topic mentioned above) as defined via a /response attribute.
<trial mytrial> / pretrialpause = 500 / stimulustimes = [0=a; 500=b] / timeout = 1000 ... </trial>
would essentially give you *no time to respond*, while
<trial mytrial> / pretrialpause = 500 / stimulustimes = [0=a; 500=b] / response = timeout(1000) ... </trial>
would give you 1000ms to do so.
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