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The simple approach is to use <batch> elements (they can randomize, etc. order via /subjects and /groupassignment attributes just like an <expt> does):
<batch> / file = "RegularIAT.iqx" / file = "BriefIAT.iqx" / subjects = (1 of 2) / groupassignment = random </batch>
<batch> / file = "BriefIAT.iqx" / file = "RegularIAT.iqx" / subjects = (2 of 2) / groupassignment = random </batch>
Regarding <include>: The <include> element is not incompatible with anything -- all <include> does is effectively paste ("include") the contents of one file in another file. Using it to combine a regular IAT and a Brief IAT by and large works the same way as detailed in the documentation topic you mentioned.
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