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> I want counterbalancing to be based on test board types rather than study boards.
I'm not sure what that means in concrete terms. Counter-balance what and how exactly? Between-subjects? Within-subjects? etc. A specific example would be helpful here.
> Also, for a given test board there is a particular study board that needs to be presented before (they cannot be randomly drawn).
You can pair your study- and testboard items as needed. See the "How to present stimulus pairs" topic in the documentation for details.
Also, I don't see why having a single <trial> element to display both study- and testboard would somehow avoid those two issues. If you have worked those out for the single -<trial>-element case, the solution should apply to the two-<trial>-case as well.
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